Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2479Conserved hypothetical protein. (92 aa)    
Predicted Functional Partners:
spoIIIAB
Stage III sporulation protein AB.
 
    0.904
spoIIIAC
Stage III sporulation protein AC.
 
    0.887
spoIIIAA
Stage III sporulation protein AA.
  
    0.863
spoIIIAE
Stage III sporulation protein AE.
 
    0.803
spoIIIAG
Stage III sporulation protein AG.
 
    0.792
spoIIIAD
Stage III sporulation protein AD.
 
    0.790
ABC1710
Conserved hypothetical protein.
 
     0.686
ABC2885
Efflux transporter multidrug resistance protein.
 
     0.637
spoIIIAF
Stage III sporulation protein AF.
  
    0.635
spoIIIAH
Stage III sporulation protein AH.
  
    0.601
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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