Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2484Conserved hypothetical protein. (164 aa)    
Predicted Functional Partners:
spoIIIAF
Stage III sporulation protein AF.
 
     0.785
ABC2626
Stage VI sporulation protein D.
  
     0.774
ABC2536
Conserved hypothetical protein; Belongs to the UPF0736 family.
  
     0.773
ABC2726
Conserved hypothetical protein.
  
     0.773
ABC2384
Conserved hypothetical protein.
  
     0.772
spoIVFA
Stage IV sporulation protein FA.
  
     0.772
ABC0097
Conserved hypothetical protein.
  
     0.770
ABC0102
Conserved hypothetical protein.
  
     0.770
ABC1291
Conserved hypothetical protein.
  
     0.769
ABC1560
Conserved hypothetical protein.
  
     0.769
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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