STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2497Conserved hypothetical protein. (265 aa)    
Predicted Functional Partners:
ABC2496
SNF2 family DNA/RNA helicase.
 
  
 0.941
gerD
Spore germination protein.
  
     0.773
rsfA
Prespore specific transcriptional activator RsfA.
  
     0.772
ABC2626
Stage VI sporulation protein D.
  
     0.771
ABC0097
Conserved hypothetical protein.
  
     0.770
ABC2370
Conserved hypothetical protein.
  
     0.770
ABC0806
Conserved hypothetical protein.
  
     0.769
cotE
Spore coat protein E.
  
     0.769
spoIIIAF
Stage III sporulation protein AF.
  
     0.768
spoIIIAH
Stage III sporulation protein AH.
  
     0.767
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.