Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2592Conserved hypothetical protein. (158 aa)    
Predicted Functional Partners:
ABC0280
Conserved hypothetical protein.
  
     0.550
ABC2593
Amidase; Belongs to the amidase family.
       0.531
ABC1151
Conserved hypothetical protein.
  
     0.513
ABC2090
Conserved hypothetical protein.
  
   
 0.512
ABC1095
Conserved hypothetical protein.
  
     0.501
ABC1200
Conserved hypothetical protein.
      
 0.482
ABC2046
Thioredoxin.
      
 0.475
ABC1980
Conserved hypothetical protein.
  
     0.453
ABC1090
Sugar ABC transporter ATP-binding protein.
      
 0.433
pstS
Phosphate ABC transporter substrate-binding protein.
       0.431
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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