Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2598Conserved hypothetical protein. (381 aa)    
Predicted Functional Partners:
ABC1303
Cell-division inhibitor.
  
    0.871
hutH
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
  
  
 0.712
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.708
ABC2599
Transcriptional pleiotropic regulator.
       0.576
ABC2596
uracil-DNA glycosylase.
       0.504
ABC2597
Hypothetical protein.
       0.481
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
       0.411
ABC3028
Conserved hypothetical protein.
       0.411
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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