STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIVFAStage IV sporulation protein FA. (252 aa)    
Predicted Functional Partners:
spoIVFB
Stage IV sporulation protein FB.
 
  
 0.973
bofA
Inhibition of the pro-sigma-K processing machinery.
  
   
 0.860
ABC0102
Conserved hypothetical protein.
  
    0.806
ABC1560
Conserved hypothetical protein.
  
    0.793
spoIIIAF
Stage III sporulation protein AF.
  
    0.792
ABC2626
Stage VI sporulation protein D.
  
   
 0.790
ABC2484
Conserved hypothetical protein.
  
     0.772
ABC0097
Conserved hypothetical protein.
  
     0.766
ABC2497
Conserved hypothetical protein.
  
     0.765
ABC2726
Conserved hypothetical protein.
  
     0.764
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.