STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2626Stage VI sporulation protein D. (377 aa)    
Predicted Functional Partners:
ABC2624
Conserved hypothetical protein.
 
  
 0.967
cotE
Spore coat protein E.
  
 
 0.882
ABC3921
Conserved hypothetical protein; Essential for the localization of CwlJ in the spore coat and for spore germination triggered by calcium and dipicolinic acid (DPA). Its assembly into the spore coat is dependent on the coat morphogenetic proteins CotE and SpoIVA.
  
  
 0.826
ABC2943
Conserved hypothetical protein.
 
   
 0.810
ABC0102
Conserved hypothetical protein.
  
    0.809
ABC2625
Hypothetical protein.
       0.800
spoIVFA
Stage IV sporulation protein FA.
  
   
 0.790
ABC1560
Conserved hypothetical protein.
  
    0.783
ABC2384
Conserved hypothetical protein.
  
   
 0.783
gerM
Germination protein GerM.
  
    0.780
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.