Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABC0824 | ABC2650 | ABC0824 | ABC2650 | Conserved hypothetical protein. | Phosphoesterase. | 0.556 |
| ABC2408 | ABC2650 | ABC2408 | ABC2650 | Conserved hypothetical protein. | Phosphoesterase. | 0.599 |
| ABC2543 | ABC2650 | ABC2543 | ABC2650 | Conserved hypothetical protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Phosphoesterase. | 0.503 |
| ABC2650 | ABC0824 | ABC2650 | ABC0824 | Phosphoesterase. | Conserved hypothetical protein. | 0.556 |
| ABC2650 | ABC2408 | ABC2650 | ABC2408 | Phosphoesterase. | Conserved hypothetical protein. | 0.599 |
| ABC2650 | ABC2543 | ABC2650 | ABC2543 | Phosphoesterase. | Conserved hypothetical protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.503 |
| ABC2650 | ABC2651 | ABC2650 | ABC2651 | Phosphoesterase. | Xanthosine triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.980 |
| ABC2650 | ABC3833 | ABC2650 | ABC3833 | Phosphoesterase. | Tributyrin esterase. | 0.438 |
| ABC2650 | ctsR | ABC2650 | ABC0118 | Phosphoesterase. | Transcriptional repressor of class III stress genes, CtsR; Belongs to the CtsR family. | 0.419 |
| ABC2650 | gerM | ABC2650 | ABC2653 | Phosphoesterase. | Germination protein GerM. | 0.650 |
| ABC2650 | recD2 | ABC2650 | ABC1588 | Phosphoesterase. | ATP-dependent exoDNAse alpha subunit; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. | 0.413 |
| ABC2650 | rph | ABC2650 | ABC2652 | Phosphoesterase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.818 |
| ABC2651 | ABC2650 | ABC2651 | ABC2650 | Xanthosine triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Phosphoesterase. | 0.980 |
| ABC2651 | gerM | ABC2651 | ABC2653 | Xanthosine triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Germination protein GerM. | 0.583 |
| ABC2651 | rph | ABC2651 | ABC2652 | Xanthosine triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.991 |
| ABC3833 | ABC2650 | ABC3833 | ABC2650 | Tributyrin esterase. | Phosphoesterase. | 0.438 |
| ctsR | ABC2650 | ABC0118 | ABC2650 | Transcriptional repressor of class III stress genes, CtsR; Belongs to the CtsR family. | Phosphoesterase. | 0.419 |
| gerM | ABC2650 | ABC2653 | ABC2650 | Germination protein GerM. | Phosphoesterase. | 0.650 |
| gerM | ABC2651 | ABC2653 | ABC2651 | Germination protein GerM. | Xanthosine triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.583 |
| gerM | rph | ABC2653 | ABC2652 | Germination protein GerM. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.592 |
page 1 of 2