Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABC0744 | ABC2655 | ABC0744 | ABC2655 | Flavoprotein oxygenase. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.456 |
ABC0900 | ABC2655 | ABC0900 | ABC2655 | Formate dehydrogenase alpha subunit. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.695 |
ABC2654 | ABC2655 | ABC2654 | ABC2655 | Sulfurtransferase; Belongs to the UPF0176 family. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.448 |
ABC2655 | ABC0744 | ABC2655 | ABC0744 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Flavoprotein oxygenase. | 0.456 |
ABC2655 | ABC0900 | ABC2655 | ABC0900 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Formate dehydrogenase alpha subunit. | 0.695 |
ABC2655 | ABC2654 | ABC2655 | ABC2654 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Sulfurtransferase; Belongs to the UPF0176 family. | 0.448 |
ABC2655 | ABC2657 | ABC2655 | ABC2657 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | MarR family transcriptional regulator. | 0.488 |
ABC2655 | gltA | ABC2655 | ABC2035 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Glutamate synthase large subunit. | 0.455 |
ABC2655 | nasC | ABC2655 | ABC1624 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Assimilatory nitrate reductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.695 |
ABC2655 | racE | ABC2655 | ABC2656 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.522 |
ABC2657 | ABC2655 | ABC2657 | ABC2655 | MarR family transcriptional regulator. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.488 |
ABC2657 | racE | ABC2657 | ABC2656 | MarR family transcriptional regulator. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.860 |
gltA | ABC2655 | ABC2035 | ABC2655 | Glutamate synthase large subunit. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.455 |
gltA | racE | ABC2035 | ABC2656 | Glutamate synthase large subunit. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.500 |
nasC | ABC2655 | ABC1624 | ABC2655 | Assimilatory nitrate reductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.695 |
racE | ABC2655 | ABC2656 | ABC2655 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.522 |
racE | ABC2657 | ABC2656 | ABC2657 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | MarR family transcriptional regulator. | 0.860 |
racE | gltA | ABC2656 | ABC2035 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Glutamate synthase large subunit. | 0.500 |