STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfAlong-chain-fatty-acid--CoA ligase. (566 aa)    
Predicted Functional Partners:
ABC2671
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.833
lipB
Triacylglycerol lipase.
     
 0.801
etfB
Electron transfer flavoprotein beta subunit.
  
  
 0.764
etfA
Electron transfer flavoprotein alpha subunit.
  
  
 0.730
ABC2672
TetR/AcrR family transcriptional regulator.
 
    0.729
ABC2988
acyl-CoA dehydrogenase.
 
 
 0.713
ABC2990
3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.709
ABC2676
DNA-directed DNA polymerase beta chain.
  
    0.610
ABC1506
butyryl-CoA dehydrogenase.
  
 
 0.586
mmgC
acyl-CoA dehydrogenase.
  
 
 0.586
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.