Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2691Antimicrobial peptide ABC transporter ATP-binding protein. (224 aa)    
Predicted Functional Partners:
ABC2690
Antimicrobial peptide ABC transporter permease.
 
 0.999
ABC2692
Conserved hypothetical protein.
 
 
 0.943
ABC0258
Antimicrobial peptide ABC transporter permease.
  
 
 0.935
ABC2693
Hypothetical protein.
  
    0.841
ABC0708
Antimicrobial peptide ABC transporter permease.
 
 
 0.630
ABC0944
Antimicrobial peptide ABC transporter permease.
  
 
 0.577
ABC3230
Antimicrobial peptide ABC transporter permease.
  
 
 0.545
ABC0253
Antimicrobial peptide ABC transporter permease.
  
 
 0.505
ABC3494
Antimicrobial peptide ABC transporter permease.
  
 
 0.505
ABC2288
arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.499
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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