STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dacCD-alanyl-D-alanine carboxypeptidase. (489 aa)    
Predicted Functional Partners:
ABC0781
Muramoyltetrapeptide carboxypeptidase.
 
  
 0.821
ABC3338
Carboxypeptidase.
 
  
 0.789
ABC1301
Microcin immunity protein.
 
  
 0.717
ABC2408
Conserved hypothetical protein.
   
 
 0.703
ABC0824
Conserved hypothetical protein.
   
 
 0.696
ABC1751
Conserved hypothetical protein.
     
 0.556
ABC2695
Oxidoreductase.
       0.518
ABC2696
Oxidoreductase.
       0.516
ABC2684
Conserved hypothetical protein.
  
     0.478
ABC0574
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
    0.476
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.