STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2696Oxidoreductase. (332 aa)    
Predicted Functional Partners:
ABC2695
Oxidoreductase.
    0.983
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
  0.918
xynB
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
 
  0.826
abfA
alpha-L-arabinofuranosidase.
   
 
  0.801
ABC1148
Xylosidase/arabinosidase; alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
   
 
  0.800
xsa
alpha-L-arabinofuranosidase.
     
  0.800
dacC
D-alanyl-D-alanine carboxypeptidase.
       0.516
ABC3151
Dehydrogenase.
  
     0.482
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.477
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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