Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2725Conserved hypothetical protein. (111 aa)    
Predicted Functional Partners:
ABC2726
Conserved hypothetical protein.
 
  
 0.980
spoIIE
Serine phosphatase stage II sporulation protein E.
  
     0.742
ABC2953
Conserved hypothetical protein.
  
   
 0.740
spoIIIAE
Stage III sporulation protein AE.
  
     0.738
ABC2376
Conserved hypothetical protein.
  
   
 0.736
ABC2745
Conserved hypothetical protein.
  
     0.733
ABC1674
Conserved hypothetical protein.
  
   
 0.730
ABC2626
Stage VI sporulation protein D.
  
     0.723
spoIVFA
Stage IV sporulation protein FA.
  
     0.720
spoIIIAB
Stage III sporulation protein AB.
  
     0.712
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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