STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (395 aa)    
Predicted Functional Partners:
pta
Phosphotransacetylase.
 
 
 0.998
acsA
Acetyl-coenzyme A synthetase.
   
 
 0.932
ABC3255
Acetyl-coenzyme A synthetase.
   
 
 0.931
dhaS
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.918
ABC1279
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.918
ABC1818
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.918
ABC2132
Acylphosphatase.
     
 0.916
ABC2973
Isocitrate lyase.
   
  
 0.791
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
  
 0.751
lutC
Conserved hypothetical protein; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source.
  
  
 0.641
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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