Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2744Conserved hypothetical protein. (140 aa)    
Predicted Functional Partners:
ABC2745
Conserved hypothetical protein.
 
    0.966
spoIIIAC
Stage III sporulation protein AC.
  
     0.756
ABC2953
Conserved hypothetical protein.
  
   
 0.754
ABC2376
Conserved hypothetical protein.
  
    0.752
ABC2349
Conserved hypothetical protein.
  
  
 0.744
spoIIR
Stage II sporulation protein R.
  
     0.739
spoIIID
Stage III sporulation protein D.
  
  
 0.738
tepA
Translocation-enhancing protein TepA.
  
    0.730
spoIIIAE
Stage III sporulation protein AE.
  
     0.719
ABC1675
Stage IV sporulation protein.
  
     0.716
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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