Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABC1585 | nifS | ABC1585 | ABC1546 | Iron-sulfur cofactor synthesis. | Cysteine desulfurase. | 0.918 |
| ABC1585 | nifZ | ABC1585 | ABC2750 | Iron-sulfur cofactor synthesis. | Cysteine desulfurase. | 0.920 |
| ABC1585 | thiG | ABC1585 | ABC1735 | Iron-sulfur cofactor synthesis. | Thiamine biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.514 |
| ABC1585 | thiI | ABC1585 | ABC2749 | Iron-sulfur cofactor synthesis. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.963 |
| ABC1585 | trmU | ABC1585 | ABC1586 | Iron-sulfur cofactor synthesis. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.885 |
| ABC1663 | ABC2317 | ABC1663 | ABC2317 | 2-methylthioadenine synthetase. | RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.693 |
| ABC1663 | metS | ABC1663 | ABC0061 | 2-methylthioadenine synthetase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.428 |
| ABC1663 | thiI | ABC1663 | ABC2749 | 2-methylthioadenine synthetase. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.507 |
| ABC2317 | ABC1663 | ABC2317 | ABC1663 | RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 2-methylthioadenine synthetase. | 0.693 |
| ABC2317 | metS | ABC2317 | ABC0061 | RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.636 |
| ABC2317 | thiI | ABC2317 | ABC2749 | RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.963 |
| ABC2317 | trmU | ABC2317 | ABC1586 | RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.541 |
| ABC2748 | nifZ | ABC2748 | ABC2750 | Small acid-soluble spore protein. | Cysteine desulfurase. | 0.524 |
| ABC2748 | thiI | ABC2748 | ABC2749 | Small acid-soluble spore protein. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.524 |
| erzA | nifZ | ABC2751 | ABC2750 | Negative regulator of FtsZ ring formation. | Cysteine desulfurase. | 0.486 |
| erzA | thiI | ABC2751 | ABC2749 | Negative regulator of FtsZ ring formation. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.486 |
| metS | ABC1663 | ABC0061 | ABC1663 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | 2-methylthioadenine synthetase. | 0.428 |
| metS | ABC2317 | ABC0061 | ABC2317 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.636 |
| metS | nifZ | ABC0061 | ABC2750 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | Cysteine desulfurase. | 0.408 |
| metS | thiI | ABC0061 | ABC2749 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.492 |
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