STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2815N-acetylmuramoyl-L-alanine amidase. (338 aa)    
Predicted Functional Partners:
ABC2816
Holin protein of PBSX prophage.
       0.773
ABC2817
Hypothetical protein.
       0.773
ABC2818
Phage-related protein.
  
    0.700
ABC2823
Phage-related protein.
     
 0.699
ABC3063
Metalloendopeptidase.
 
  
 0.699
ABC2824
Tail length tape measure protein.
  
  
 0.695
ABC2821
Phage-related protein.
  
    0.668
ABC2822
Phage-related pre-neck appendage protein.
  
    0.665
ABC2819
Hypothetical protein.
       0.658
ABC2820
Hypothetical protein.
       0.658
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.