STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2881Nitrate/sulfonate/taurine/bicarbonate ABC transporter substrate-binding protein. (328 aa)    
Predicted Functional Partners:
ABC2883
Nitrate/sulfonate/taurine/bicarbonate ABC transporter permease.
 
 
 0.985
ABC2882
Nitrate/sulfonate/taurine/bicarbonate ABC transporter ATP-binding protein.
 
 
 0.983
ABC2880
Peptidase.
       0.701
ABC2698
Conserved hypothetical protein.
  
     0.608
gpr
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.574
ABC1674
Conserved hypothetical protein.
  
     0.564
ABC1675
Stage IV sporulation protein.
  
     0.564
spoIIIAD
Stage III sporulation protein AD.
  
     0.559
ABC3746
Nitrate/sulfonate/bicarbonate ABC transporter permease.
 
 
 0.550
spoIIIAE
Stage III sporulation protein AE.
  
     0.535
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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