STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2896Conserved hypothetical protein. (208 aa)    
Predicted Functional Partners:
cypC
Fatty acid alpha hydroxylase; Cytochrome P450.
 
 0.561
ABC2895
Enterochelin ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.511
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.509
ABC2893
Enterochelin ABC transporter ATP-binding protein.
       0.473
ABC2894
Enterochelin ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.473
cypA
Cytochrome P450.
  
 0.466
ABC2897
Sodium:dicarboxylate symporter; Mediates uptake of L-cystine, the oxidized form of L- cysteine; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.460
ABC0731
Alkaline phosphatase.
 
   
 0.448
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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