STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2901Cytochrome c biogenesis protein. (165 aa)    
Predicted Functional Partners:
ctaB
Cytochrome oxidase assembly factor; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.
 
     0.687
ABC2204
Conserved hypothetical protein.
  
     0.630
ABC2900
Conserved hypothetical protein.
       0.599
ABC2946
Conserved hypothetical protein.
  
     0.578
ABC3912
Conserved hypothetical protein; May function as heme-dependent peroxidase.
  
     0.566
ABC2938
Conserved hypothetical protein.
  
     0.561
ABC1286
Cytochrome d ubiquinol oxidase subunit II CydB.
  
     0.546
ABC3902
Conserved hypothetical protein.
  
     0.507
ABC1305
Conserved hypothetical protein.
  
     0.483
ABC3207
Spermidine/putrescine ABC transporter permease.
   
    0.465
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.