Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABC2935Conserved hypothetical protein. (79 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.832
ABC2936
Conserved hypothetical protein; Belongs to the UPF0349 family.
 
     0.769
cssS
Two-component sensor histidine kinase.
  
     0.744
ABC2561
Conserved hypothetical protein.
  
     0.738
ABC1564
Conserved hypothetical protein.
  
     0.727
ABC2447
Conserved hypothetical protein.
  
     0.709
ABC3896
Conserved hypothetical protein.
  
     0.705
ABC2036
Tellurite resistance protein; Belongs to the TelA family.
  
     0.704
ABC0005
Conserved hypothetical protein.
  
     0.696
ABC1274
Conserved hypothetical protein.
  
     0.690
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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