Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2936Conserved hypothetical protein; Belongs to the UPF0349 family. (78 aa)    
Predicted Functional Partners:
ABC2937
NADH dehydrogenase.
 
  
 0.790
ABC2935
Conserved hypothetical protein.
 
     0.769
ABC4097
Conserved hypothetical protein.
  
     0.723
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.721
ABC2938
Conserved hypothetical protein.
 
     0.685
ABC1518
Conserved hypothetical protein.
  
     0.680
ABC2189
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.677
ABC2381
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.644
ABC1317
Conserved hypothetical protein.
  
     0.625
ABC2042
Conserved hypothetical protein.
  
     0.610
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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