Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABC2937NADH dehydrogenase. (544 aa)    
Predicted Functional Partners:
ABC2924
NADH dehydrogenase.
 
  
0.928
ABC2936
Conserved hypothetical protein; Belongs to the UPF0349 family.
 
  
 0.790
ABC2397
Conserved hypothetical protein.
  
   
 0.708
ABC3885
Conserved hypothetical protein.
  
     0.696
ABC2935
Conserved hypothetical protein.
 
     0.654
ABC1906
Conserved hypothetical protein.
  
     0.651
gltA
Glutamate synthase large subunit.
     
 0.627
qcrA
Menaquinol-cytochrome c reductase iron-sulfur subunit.
  
  
 0.614
ctaF
Cytochrome caa3 oxidase subunit IV CoxD.
 
   
 0.613
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.602
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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