Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2947Conserved hypothetical protein. (84 aa)    
Predicted Functional Partners:
ABC2949
Conserved hypothetical protein.
  
     0.760
ABC2946
Conserved hypothetical protein.
 
     0.757
kbaA
KinB signaling pathway activation protein; Involved in the activation of the KinB signaling pathway of sporulation.
  
     0.750
ABC2400
Conserved hypothetical protein.
  
     0.750
ABC3859
Conserved hypothetical protein.
  
     0.745
ABC2905
Conserved hypothetical protein.
  
     0.743
ABC2536
Conserved hypothetical protein; Belongs to the UPF0736 family.
  
     0.731
ABC0097
Conserved hypothetical protein.
  
     0.722
ABC1323
Conserved hypothetical protein.
  
     0.721
ABC1709
Conserved hypothetical protein.
  
     0.719
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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