Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2949Conserved hypothetical protein. (180 aa)    
Predicted Functional Partners:
ABC0010
Conserved hypothetical protein.
  
     0.763
bofA
Inhibition of the pro-sigma-K processing machinery.
  
     0.763
ABC2947
Conserved hypothetical protein.
  
     0.760
ABC1781
Conserved hypothetical protein.
  
     0.759
ABC1291
Conserved hypothetical protein.
  
     0.758
ABC1707
Conserved hypothetical protein.
  
     0.753
ABC0082
Conserved hypothetical protein.
  
     0.747
ABC2383
Conserved hypothetical protein.
  
     0.739
ABC1312
Conserved hypothetical protein.
  
    0.734
ABC1709
Conserved hypothetical protein.
  
     0.718
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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