STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2975Nitrogen fixation protein NifU. (147 aa)    
Predicted Functional Partners:
csd
Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.999
ABC2977
ABC transporter.
 
  
 0.998
ABC2974
ABC transporter.
 
  
 0.995
ABC2978
ABC transporter ATP-binding protein.
 
  
 0.988
ABC4111
Selenocysteine lyase.
 
 
 0.983
ABC1585
Iron-sulfur cofactor synthesis.
 
 0.982
nifZ
Cysteine desulfurase.
 
 0.982
nifS
Cysteine desulfurase.
 
 0.981
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.905
ABC0680
Molecular chaperone HscC; Belongs to the heat shock protein 70 family.
 
 0.900
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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