STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdSelenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (407 aa)    
Predicted Functional Partners:
ABC2975
Nitrogen fixation protein NifU.
 
 
 0.996
ABC2977
ABC transporter.
 
 
 0.992
ABC2974
ABC transporter.
 
 
 0.986
ABC2978
ABC transporter ATP-binding protein.
 
  
 0.985
ABC4111
Selenocysteine lyase.
  
  
 
0.923
trxB
Thioredoxin reductase.
  
 
 0.913
ABC1863
Thioredoxin reductase.
  
 
 0.906
ABC0021
Cystathionine gamma-synthase.
     
 0.900
metI
Cystathionine gamma-synthase.
     
 0.900
ABC1960
Conserved hypothetical protein.
 
  
 0.787
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.