STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3010Conserved hypothetical protein. (497 aa)    
Predicted Functional Partners:
ABC3012
Conserved hypothetical protein.
 
  
 0.952
ABC1013
Conserved hypothetical protein.
 
  
 0.856
ABC3606
Conserved hypothetical protein.
  
 0.854
ABC0467
Conserved hypothetical protein.
 
  
 0.853
ABC0219
Conserved hypothetical protein.
 
  
 0.850
ABC3011
Hypothetical protein.
 
     0.817
ABC0626
Conserved hypothetical protein.
 
  
 0.732
ABC3013
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.656
ABC3015
Dihydrodipicolinate synthase; Belongs to the DapA family.
       0.651
ABC3014
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.649
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.