Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3012Conserved hypothetical protein. (324 aa)    
Predicted Functional Partners:
ABC3010
Conserved hypothetical protein.
 
  
 0.952
ABC0217
Conserved hypothetical protein.
 
  
 0.850
ABC0468
Conserved hypothetical protein.
 
  
 0.850
ABC0625
Conserved hypothetical protein.
 
  
 0.850
ABC1015
Conserved hypothetical protein.
 
  
 0.850
ABC3604
Conserved hypothetical protein.
 
  
 0.850
ABC3011
Hypothetical protein.
 
     0.809
ABC3013
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
    0.727
ABC3014
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.721
ABC3015
Dihydrodipicolinate synthase; Belongs to the DapA family.
       0.720
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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