ABC3063 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABC3063

Metalloendopeptidase. (457 aa)

Predicted Functional Partners:

ftsX

0.967

ftsE

0.964

lytE

0.829

ABC0068

0.825

ABC1938

0.817

ABC3988

0.813

cwlC

0.779

ABC3062

0.744

ABC1928

0.740

spoIIQ

0.739

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC0068	ABC1938	ABC0068	ABC1938	Conserved hypothetical protein.	Cell wall lytic activity.	0.459
ABC0068	ABC3063	ABC0068	ABC3063	Conserved hypothetical protein.	Metalloendopeptidase.	0.825
ABC0068	ABC3988	ABC0068	ABC3988	Conserved hypothetical protein.	Conserved hypothetical protein.	0.437
ABC0068	lytE	ABC0068	ABC3827	Conserved hypothetical protein.	Cell wall lytic activity endopeptidase.	0.458
ABC1928	ABC3063	ABC1928	ABC3063	Peptidoglycan-binding domain-containing protein.	Metalloendopeptidase.	0.740
ABC1928	ABC3988	ABC1928	ABC3988	Peptidoglycan-binding domain-containing protein.	Conserved hypothetical protein.	0.435
ABC1928	ftsE	ABC1928	ABC3065	Peptidoglycan-binding domain-containing protein.	Cell-division ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.	0.417
ABC1928	ftsX	ABC1928	ABC3064	Peptidoglycan-binding domain-containing protein.	Cell-division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.446
ABC1938	ABC0068	ABC1938	ABC0068	Cell wall lytic activity.	Conserved hypothetical protein.	0.459
ABC1938	ABC3063	ABC1938	ABC3063	Cell wall lytic activity.	Metalloendopeptidase.	0.817
ABC1938	cwlC	ABC1938	ABC0927	Cell wall lytic activity.	N-acetylmuramoyl-L-alanine amidase.	0.467
ABC1938	ftsE	ABC1938	ABC3065	Cell wall lytic activity.	Cell-division ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.	0.578
ABC1938	ftsX	ABC1938	ABC3064	Cell wall lytic activity.	Cell-division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.708
ABC3062	ABC3063	ABC3062	ABC3063	Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.	Metalloendopeptidase.	0.744
ABC3062	ftsE	ABC3062	ABC3065	Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.	Cell-division ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.	0.645
ABC3062	ftsX	ABC3062	ABC3064	Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.	Cell-division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.706
ABC3063	ABC0068	ABC3063	ABC0068	Metalloendopeptidase.	Conserved hypothetical protein.	0.825
ABC3063	ABC1928	ABC3063	ABC1928	Metalloendopeptidase.	Peptidoglycan-binding domain-containing protein.	0.740
ABC3063	ABC1938	ABC3063	ABC1938	Metalloendopeptidase.	Cell wall lytic activity.	0.817
ABC3063	ABC3062	ABC3063	ABC3062	Metalloendopeptidase.	Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.	0.744