Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comFALate competence protein ComFA. (451 aa)    
Predicted Functional Partners:
comGA
Late competence protein ComGA.
   
  
 0.984
comFC
Late competence protein ComFC.
 
  
 0.975
comEA
Late competence protein ComEA.
   
  
 0.951
comGC
Late competence protein ComGC; Required for transformation and DNA binding.
 
  
 0.931
comEC
Late competence protein ComEC.
  
  
 0.900
comGB
Late competence protein ComGB.
   
  
 0.900
ABC2279
Smf family DNA processing protein.
   
  
 0.767
ABC3085
Conserved hypothetical protein.
       0.766
recA
Recombination protein A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
      
 0.752
ABC2526
Competence protein/transcription factor.
  
  
 0.750
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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