STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3102Hypothetical protein. (250 aa)    
Predicted Functional Partners:
cinA
Competence/damage-inducible protein CinA; Belongs to the CinA family.
  
  
 0.890
ABC3103
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
 
     0.847
ABC3105
Glycosyltransferase.
 
   
 0.792
ABC2203
Conserved hypothetical protein.
  
    0.709
ABC0679
Conserved hypothetical protein.
 
 
 0.672
ABC3104
Sugar transferase.
 
     0.617
tagD
Glycerol-3-phosphate cytidylyltransferase.
  
  
 0.612
ABC3100
Teichoic acid biosynthesis protein F.
 
     0.560
ABC1195
Hypothetical protein.
  
     0.558
folD
Bifunctional protein FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
  
 0.522
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.