Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3105Glycosyltransferase. (342 aa)    
Predicted Functional Partners:
ABC3102
Hypothetical protein.
 
   
 0.807
ABC3104
Sugar transferase.
   
 0.739
soj
Sporulation initiation inhibitor protein Soj.
  
 
 0.648
ABC3697
Sugar transferase.
   
 0.599
ABC3099
Glycosyltransferase.
 
  
 0.594
ABC3106
Conserved hypothetical protein.
     
 0.524
ABC0509
Conserved hypothetical protein.
  
 
 0.505
ABC3103
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
 
    0.487
ABC3694
Glycosyltransferase.
 
  
 0.442
ABC1904
Conserved hypothetical protein.
  
 
 0.440
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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