STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3113Glycosyl hydrolase. (430 aa)    
Predicted Functional Partners:
ABC3112
Conserved hypothetical protein.
       0.575
gerKC
Spore germination protein KC.
  
     0.548
ABC0333
Conserved hypothetical protein.
 
   
 0.533
sleB
Spore cortex-lytic enzyme.
 
  
 0.531
gerKA
Spore germination protein KA.
  
     0.512
ABC3114
Oxidoreductase.
  
    0.510
gerKB
Spore germination protein KB.
  
     0.508
sspB
Small acid-soluble spore protein.
 
     0.467
cotE
Spore coat protein E.
  
  
 0.459
ABC2748
Small acid-soluble spore protein.
 
     0.456
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.