Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3117Sugar ABC transporter substrate-binding protein. (534 aa)    
Predicted Functional Partners:
ABC3118
Sugar ABC transporter permease.
 
   0.961
ABC3119
Sugar ABC transporter permease.
 
    0.935
ABC0557
Sugar ABC transporter permease.
 
   0.862
ABC0362
Polysaccharide ABC transporter permease.
 
   0.850
ABC1136
Polysaccharide ABC transporter permease.
 
   0.840
ABC0728
Polysaccharide ABC transporter permease.
 
   0.838
ABC1146
Sugar ABC transporter permease.
 
   0.837
ABC0361
Polysaccharide ABC transporter permease.
 
    0.794
ABC1135
Polysaccharide ABC transporter permease.
 
    0.791
lplB
Sugar ABC transporter permease.
 
    0.791
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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