STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC31362-dehydro-3-deoxyphosphogluconate aldolase. (211 aa)    
Predicted Functional Partners:
kdgK
2-keto-3-deoxygluconate kinase.
 
 
 0.982
ABC3352
2-keto-3-deoxygluconate kinase.
 
 0.982
ABC0523
2-dehydro-3-deoxyphosphogluconate aldolase.
  
  
 
0.909
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
     
 0.909
ABC2175
Glycolate oxidase subunit.
   
 
 0.908
ABC2177
Glycolate oxidase subunit.
   
 
 0.908
ABC3248
Glycolate oxidase subunit.
   
 
 0.908
ABC4037
Glycolate oxidase subunit.
   
 
 0.908
ABC0092
2-ketogluconate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.907
ABC2973
Isocitrate lyase.
     
 0.906
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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