STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3257Short-chain dehydrogenase. (238 aa)    
Predicted Functional Partners:
ABC3532
3-oxoacyl-[acyl-carrier-protein] reductase.
 
   0.710
ABC3114
Oxidoreductase.
 
   0.704
ABC3620
3-oxoacyl-[acyl-carrier-protein] reductase.
 
   0.697
ABC3145
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   0.696
ABC2206
3-oxoacyl-[acyl-carrier-protein] reductase.
 
   0.651
ABC1310
3-oxoacyl-[acyl-carrier-protein] reductase.
 
   0.643
ABC0681
Acetoin (diacetyl) reductase.
 
   0.616
ABC1160
Sorbitol-6-phosphate 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   0.606
ABC1993
2,4-dienoyl-CoA reductase.
 
   0.598
ABC1038
2-deoxy-D-gluconate 3-dehydrogenase.
 
   0.571
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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