Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3258Conserved hypothetical protein. (264 aa)    
Predicted Functional Partners:
ABC3260
Fe3+ ABC transporter permease.
 
     0.938
ABC3259
Beta-lactamase superfamily Zn-dependent hydrolase.
 
     0.930
ABC3261
Fe3+ ABC transporter substrate-binding protein.
 
     0.905
ABC3262
Fe3+ ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.848
ABC3263
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.760
ABC1436
Multidrug ABC transporter permease.
  
     0.721
ABC1435
Multidrug ABC transporter permease.
  
     0.698
dinB
Nuclease inhibitor.
  
     0.624
ABC3672
Hypothetical protein.
  
     0.622
ABC3639
Bacitracin ABC transporter permease.
  
     0.547
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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