ABC3271 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABC3271

Sugar ABC transporter substrate-binding protein. (441 aa)

Predicted Functional Partners:

ABC3273

0.887

ABC3272

0.878

ABC3274

0.690

ABC0398

0.588

ABC3275

0.510

ABC3258

0.460

ABC0557

0.451

ABC1146

0.441

ABC0341

0.439

ABC0352

0.439

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ABC0341	ABC0352	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.910
ABC0341	ABC0398	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter substrate-binding protein.	0.453
ABC0341	ABC0557	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.440
ABC0341	ABC1146	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.440
ABC0341	ABC3271	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter substrate-binding protein.	0.439
ABC0341	ABC3272	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.704
ABC0341	ABC3273	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.713
ABC0352	ABC0341	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.910
ABC0352	ABC0398	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter substrate-binding protein.	0.453
ABC0352	ABC0557	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.440
ABC0352	ABC1146	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.440
ABC0352	ABC3271	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter substrate-binding protein.	0.439
ABC0352	ABC3272	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.764
ABC0352	ABC3273	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.784
ABC0398	ABC0341	Sugar ABC transporter substrate-binding protein.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.453
ABC0398	ABC0352	Sugar ABC transporter substrate-binding protein.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.453
ABC0398	ABC0557	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter permease.	0.441
ABC0398	ABC3271	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.588
ABC0557	ABC0341	Sugar ABC transporter permease.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.440
ABC0557	ABC0352	Sugar ABC transporter permease.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.440