ABC3282 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABC3282

Sugar ABC transporter substrate-binding protein. (434 aa)

Predicted Functional Partners:

ABC3281

0.969

ABC3280

0.948

ABC3518

0.890

ABC4028

0.875

ABC3775

0.842

ABC0317

0.839

ABC0341

0.833

ABC0352

0.833

ABC1214

0.833

msmX

0.833

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC0317	ABC0341	ABC0317	ABC0341	Sugar ABC transporter permease.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.621
ABC0317	ABC0352	ABC0317	ABC0352	Sugar ABC transporter permease.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.674
ABC0317	ABC3280	ABC0317	ABC3280	Sugar ABC transporter permease.	Sugar ABC transporter permease.	0.858
ABC0317	ABC3282	ABC0317	ABC3282	Sugar ABC transporter permease.	Sugar ABC transporter substrate-binding protein.	0.839
ABC0317	ABC3518	ABC0317	ABC3518	Sugar ABC transporter permease.	Sugar ABC transporter permease.	0.771
ABC0317	ABC4028	ABC0317	ABC4028	Sugar ABC transporter permease.	Maltose ABC transporter permease.	0.713
ABC0317	msmX	ABC0317	ABC1514	Sugar ABC transporter permease.	Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.727
ABC0341	ABC0317	ABC0341	ABC0317	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.621
ABC0341	ABC0352	ABC0341	ABC0352	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.910
ABC0341	ABC1214	ABC0341	ABC1214	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.615
ABC0341	ABC3280	ABC0341	ABC3280	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.662
ABC0341	ABC3281	ABC0341	ABC3281	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.603
ABC0341	ABC3282	ABC0341	ABC3282	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter substrate-binding protein.	0.833
ABC0341	ABC3518	ABC0341	ABC3518	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.840
ABC0341	ABC3775	ABC0341	ABC3775	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.634
ABC0341	ABC4028	ABC0341	ABC4028	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Maltose ABC transporter permease.	0.818
ABC0341	msmX	ABC0341	ABC1514	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.587
ABC0352	ABC0317	ABC0352	ABC0317	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.674
ABC0352	ABC0341	ABC0352	ABC0341	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.910
ABC0352	ABC1214	ABC0352	ABC1214	Glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.679