STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3292Serine--pyruvate aminotransferase. (537 aa)    
Predicted Functional Partners:
ABC3291
Uncharacterized protein; Probable gene remnant. Similar to the N-terminal region of Oceanobacillus iheyensis penicillin-binding protein OB0285 (336 aa) TR:Q8ETH6; locus_tag:ABC3289; Belongs to the PlsY family.
       0.832
ABC3293
Phosphoglycerol transferase; Belongs to the LTA synthase family.
       0.787
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.566
gltA
Glutamate synthase large subunit.
  
  
 0.548
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
  
    0.538
ABC3713
Conserved hypothetical protein.
 
  
 0.463
ABC3946
Rieske [2Fe-2S] iron-sulfur protein.
  
 
 0.457
ABC0258
Antimicrobial peptide ABC transporter permease.
 
     0.448
ABC3736
Uricase.
 
    0.433
tagD
Glycerol-3-phosphate cytidylyltransferase.
  
  
 0.401
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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