Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3314Conserved hypothetical protein. (363 aa)    
Predicted Functional Partners:
ABC3313
Hydantoinase.
     0.995
ABC3315
Cytosine permease.
     0.931
ABC3316
TetR family transcriptional regulator.
       0.692
ABC0569
Conserved hypothetical protein.
 
     0.551
ABC0582
Conserved hypothetical protein.
 
     0.546
ABC0583
Conserved hypothetical protein.
 
     0.476
ABC4033
Nucleobase:cation symporter.
 
     0.439
ABC3317
Acetyltransferase.
       0.431
ABC3318
Hypothetical protein.
       0.423
ABC0584
Aminopeptidase T.
 
     0.412
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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