STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3315Cytosine permease. (429 aa)    
Predicted Functional Partners:
ABC3314
Conserved hypothetical protein.
     0.928
ABC3313
Hydantoinase.
 
     0.913
ABC4032
Cytosine deaminase.
 
  
 0.802
ABC3316
TetR family transcriptional regulator.
  
    0.755
ABC0581
Conserved hypothetical protein.
 
     0.693
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.523
ABC3317
Acetyltransferase.
  
    0.474
ABC3318
Hypothetical protein.
       0.452
pyrAA
Carbamoyl-phosphate synthase pyrimidine-specific small chain; Belongs to the CarA family.
   
    0.420
carA
Arginine-specific carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
   
    0.420
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.