STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgRLacI family transcriptional regulator. (334 aa)    
Predicted Functional Partners:
ABC3352
2-keto-3-deoxygluconate kinase.
 
  
 0.825
ABC3357
C4-dicarboxylate transport system substrate-binding protein.
       0.803
ABC3473
Conserved hypothetical protein.
  
     0.765
gltA
Glutamate synthase large subunit.
    
 
 0.761
lacR
LacI family transcriptional regulator.
  
     0.744
hxlB
6-phospho-3-hexuloisomerase.
       0.727
hxlA
Hexulose-6-phosphate synthase.
 
   
 0.714
ABC3356
C4-dicarboxylate transport system permease small protein.
       0.708
ABC3355
C4-dicarboxylate transport system permease large protein.
       0.701
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.669
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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