STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3361Hypothetical protein. (266 aa)    
Predicted Functional Partners:
ABC3359
PadR family transcriptional regulator.
       0.800
ABC3360
Conserved hypothetical protein.
      
0.800
kdgR
LacI family transcriptional regulator.
       0.469
ABC3357
C4-dicarboxylate transport system substrate-binding protein.
       0.442
ABC3355
C4-dicarboxylate transport system permease large protein.
       0.425
ABC3356
C4-dicarboxylate transport system permease small protein.
       0.425
hxlB
6-phospho-3-hexuloisomerase.
       0.417
ABC3352
2-keto-3-deoxygluconate kinase.
       0.401
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.401
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.