STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3369Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (497 aa)    
Predicted Functional Partners:
xsa
alpha-L-arabinofuranosidase.
 
  
 0.886
ABC0393
Conserved hypothetical protein.
  
  
 0.756
pelB
Pectate lyase.
 
   
 0.742
abfA
alpha-L-arabinofuranosidase.
 
  
 0.727
ABC1137
Polysaccharide ABC transporter substrate-binding protein.
  
    0.648
ABC3370
Conserved hypothetical protein.
       0.634
ABC0320
Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.619
ABC0555
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.616
ABC3517
Arabinogalactan endo-1,4-beta-galactosidase.
 
  
 0.551
ABC1149
Conserved hypothetical protein.
 
   
 0.527
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.