STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xsaalpha-L-arabinofuranosidase. (498 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.950
abfA
alpha-L-arabinofuranosidase.
 
  
 
0.940
ABC3369
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.886
uxaC
Uronate isomerase.
  
 
 0.848
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.811
ABC2696
Oxidoreductase.
     
  0.800
ABC1212
Conserved hypothetical protein.
 
   
 0.795
ABC0555
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.737
ABC1148
Xylosidase/arabinosidase; alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.707
ABC3370
Conserved hypothetical protein.
       0.706
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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