Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3402Conserved hypothetical protein. (225 aa)    
Predicted Functional Partners:
ABC0431
Conserved hypothetical protein.
 
   
 0.739
ABC2953
Conserved hypothetical protein.
  
     0.574
ABC1827
Stage V sporulation protein AE.
 
  
 0.536
ABC2003
Sopre germination protein.
 
  
 0.535
gerAA
Sopre germination protein.
 
  
 0.528
spoVAC
Stage V sporulation protein AC.
 
  
 0.505
ABC3403
Small acid-soluble spore protein.
       0.499
ABC1798
Stage V sporulation protein AE.
 
  
 0.466
spoVAD
Stage V sporulation protein AD.
 
  
 0.466
ABC1797
Stage V sporulation protein AD.
 
  
 0.465
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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