Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3408Multidrug ABC transporter ATP-binding protein. (292 aa)    
Predicted Functional Partners:
ABC3409
GntR family transcriptional regulator.
 
    0.957
ABC3407
Hypothetical protein.
       0.832
ABC0622
GntR family transcriptional regulator.
 
    0.795
ABC0620
Conserved hypothetical protein.
 
     0.496
ABC3410
Conserved hypothetical protein.
       0.474
ABC1460
GntR family transcriptional regulator.
 
    0.462
ABC3411
uroporphyrinogen-III synthase.
       0.424
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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